CC    = cc
#
# Uncomment these and fix the paths if you have the XMAS library and
# want XMAS support
# XMAS  = -DUSE_XMAS  -I/home/amartin/inpharmatica/cvs/software/include
# XMASLIB = -L/home/amartin/inpharmatica/cvs/software/lib -lxmas -lacrm
#
# To allow decompression of gzipped PDB files on the fly, change the 
# COPT line to
COPT  = -DGUNZIP_SUPPORT -g
# COPT  = 
#
LINK1 = 
LINK2 =
ANSI  = ansi -p 

OFILES = main.o todo.o fitting.o NWAlign.o
PFILES = main.p todo.p fitting.p NWAlign.p
IFILES = ProFit.h protos.h
LFILES = bioplib/ReadPDB.o bioplib/WritePDB.o bioplib/parse.o \
bioplib/PDB2Seq.o bioplib/WindIO.o bioplib/help.o \
bioplib/fsscanf.o bioplib/ApMatPDB.o bioplib/align.o \
bioplib/fit.o bioplib/throne.o bioplib/angle.o bioplib/array2.o \
bioplib/ParseRes.o bioplib/OpenFile.o bioplib/padterm.o \
bioplib/ReadPIR.o bioplib/openorpipe.o bioplib/GetWord.o \
bioplib/SelAtPDB.o bioplib/IndexPDB.o bioplib/CopyPDB.o \
bioplib/FindZonePDB.o bioplib/countchar.o bioplib/KillLeadSpaces.o \
bioplib/MatMult3_33.o bioplib/StringToUpper.o bioplib/upstrncmp.o \
bioplib/LegalAtomSpec.o bioplib/GetPDBChainLabels.o bioplib/DupePDB.o \
bioplib/TranslatePDB.o bioplib/AtomNameMatch.o bioplib/chindex.o

profit : $(OFILES) $(LFILES)
	$(CC) -g -o profit $(OFILES) $(LFILES) $(XMAS) -lm $(LINK2) $(XMASLIB)
   
.c.o : $(IFILES)
	$(CC) $(COPT) -o $@ -c $<

clean :
	/bin/rm $(OFILES) $(LFILES)

protos : $(PFILES)

.c.p   :
	$(ANSI) $< $@


