eugene/src/SensorPlugins/MarkovIMM/GetData directory content
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TrainIMM.cc
     	create IMM from .list files (see Glimmer)
	The basic usage is:
	      TrainIMM <exonfile> <intronfile> 
	 where <exonfile> and <intronfile> are exon/intron sequences
	 with one identifier followed by the sequence per ligne.

	 Optionnal arguments:
	 -5 <utr5file>: a set of UTR5 sequences
	 -3 <utr3file>: a set of UTR3 sequences
	 -I <igfile>: a set of intergenic sequences
	 -h: when no <igfile> is available, TrainIMM use introns+their
	 reverse complement to estimate the IG model. The -h flag
	 halves the k-mer counts in this case.

	 NB: if a UTR5 file is provided, the UTR 3 must also be provided.
	 
strarray.h
	A trimmed down version of Glimmer IMM that use integers
	instead of floats.
