.. _Autodock_Protein_Data_Bank_Q_(Partial_Charge)_&_Type:

Autodock Protein Data Bank Q (Partial Charge) & Type (pdbqt)
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Read Options
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-b  *Disable automatic bonding*
-d  *Input file is in dlg (docking log file) format.*


Write Options
~~~~~~~~~~~~~ 

-b  *Enables automatic bonding before writing to pdbqt format*
-r  *Outputs rigid molecule (no branches)*
-s  *Outputs as a flexible residue*
-p  *Preserves the atom indexes from the input file (default is to renumber sequentially).*


